PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g014000.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 150aa    MW: 17018.2 Da    PI: 10.0699
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g014000.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.1e-05526223
                    EETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                    +C++Cgk F ++  L  H++ H
  Csa03g014000.1  5 ECQYCGKEFANSQALGGHQNAH 26
                    7******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.3E-5330IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.08E-6331No hitNo description
PROSITE profilePS5015711.801431IPR007087Zinc finger, C2H2
PfamPF139122.3E-5528IPR007087Zinc finger, C2H2
PROSITE patternPS000280626IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MKRLECQYCG KEFANSQALG GHQNAHKKER LKKKRLQLQA RRASIGYYLT SHQQPITTAF  60
QGPYQTPSYC AFSSMHVNNN NQMGVYNEDW SPMSSQISFG SKNTCQDLNE QSGEMGKMYG  120
VRPNMIQFQR DLTSRSGSKR SIKSLDLHL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934461e-144AB493446.1 Arabidopsis thaliana At1g10480 mRNA for hypothetical protein, partial cds, clone: RAAt1g10480.
GenBankAC0070671e-144AC007067.4 Genomic sequence for Arabidopsis thaliana BAC T10O24 from Chromosome 1, complete sequence.
GenBankATHZFPE1e-144L39648.1 Arabidopsis thaliana zinc finger protein (ZFP5) mRNA, complete cds.
GenBankAY0863021e-144AY086302.1 Arabidopsis thaliana clone 23664 mRNA, complete sequence.
GenBankBT0248401e-144BT024840.1 Arabidopsis thaliana At1g10480 gene, complete cds.
GenBankCP0026841e-144CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010458395.11e-109PREDICTED: zinc finger protein 5-like
SwissprotQ392646e-85ZFP5_ARATH; Zinc finger protein 5
TrEMBLD7KKR85e-86D7KKR8_ARALL; Zinc finger protein 5, ZFP5
STRINGfgenesh2_kg.1__1115__AT1G10480.11e-85(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.13e-79zinc finger protein 5